PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G18280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 302aa    MW: 33615.7 Da    PI: 6.5349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G18280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.5e-0560119154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksL 54 
                      r++ ++erE+  R ++N+ f eL  +l +         a+ + + Ka iL+ +++ +++L
  OPUNC03G18280.1  60 RKAHKSEREKLKRGHLNDLFGELGNMLASEQlqqpsaEADRQSNGKACILTDTTRILRDL 119
                      678899***********************6669998666666699999999999988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.6E-857139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.84559119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.41E-960148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MADGFLVDWF SAANGRRRFL EEAMVPSERG DVATAVRPAA ADKLVHGPIS DKKCRKKVPR  60
KAHKSEREKL KRGHLNDLFG ELGNMLASEQ LQQPSAEADR QSNGKACILT DTTRILRDLL  120
SQVKSLRQEN STLQNESNYV TMERNELQDE NGVLRNEISD LQNELRIRAT GSPGWGHGAT  180
GPPLPIPPSP NTVFQSQQPM QPSPMTTSTV FPLQQPLPQP TVIEPSYARQ PLELKLFLEA  240
PPTEDPEPSE NQEALNNVAR PQPRYPTEAS SWPISLGFPR MENEQCSSRT AYNSKIDSTG  300
RV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8301390.0CT830139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633301.11e-169PREDICTED: transcription factor bHLH47
RefseqXP_015633302.11e-169PREDICTED: transcription factor bHLH47
TrEMBLA0A0E0KEC30.0A0A0E0KEC3_ORYPU; Uncharacterized protein
STRINGLOC_Os03g26210.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-26bHLH family protein